PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G257100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 442aa    MW: 45819.9 Da    PI: 8.566
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G257100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19354388135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Sevir.1G257100.1.p 354 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 388
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-14347409No hitNo description
SMARTSM004011.4E-18348402IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.965348384IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15352386IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.77E-15353410No hitNo description
PfamPF003203.1E-17354388IPR000679Zinc finger, GATA-type
PROSITE patternPS003440354379IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MTHQTLISSA PAFSPASHSL HASTPLLFTR SSPSSSSCSP PAAAAAPAMA SFVAHHHGSL  60
VEREGRMAAL RSSLRPCEAA EEVDVAPAAC GAADRGAGLF GDGFSVEDLL DLEDLCEVDK  120
DCAELGEATP APAAVEEDKL SSDSHGSSVV SYELMALPPP VIDLSLPAHD AEELEWVSRI  180
MDDSLAELPP PPKLPAAPLA AAARRPPLER AVPAPAAPAP MRSPTICALS TEALVPVKAR  240
RSKRSRASVW SLSGGAPPSD STSSSSTTTT SSCSSSASFS SFLFLPAESP PPFWAAHLLG  300
EAPPRGSKKS KHGKHGKNNG KPKKRGRKPK HHPAASHFAG GAAASPPVPG DRRCSHCGVQ  360
KTPQWRAGPE GAKTLCNACG VRYKSGRLLP EYRPACSPTF VSSIHSNSHR KVLEMRRKKE  420
GVVLIPGPAP LPAAAPAVAS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G257100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953279.10.0GATA transcription factor 5
TrEMBLK3YSH50.0K3YSH5_SETIT; Uncharacterized protein
STRINGSi017219m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-39GATA transcription factor 5