PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G274400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 373aa    MW: 37637.8 Da    PI: 8.6625
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G274400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.3e-3975136263
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                         kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Sevir.1G274400.1.p  75 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 136
                         7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2674124IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3377133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05979133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDAAQWHQGL GLGKPMEEML MAGNTNPNQN PNPPPAAPSA APAAQRAPGA PAAAPPAPAA  60
AGAGAGTERR ARPQKEKALN CPRCNSTNTK FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR  120
NVPVGGGSRK NKRSSSAVSS AATAAASTSA AVSGTIPVGL AAKHPKLMHE GAHDLNLAFP  180
HHNGRGLHPP EFSAFPSLES SSVCNPGATM AGNGAAGRGV GALSAMELLR STGCYVPLQH  240
VQLGMPAEYA AAGFALGDFR MPPPPHSQSV LGFSLDTHGT GGVGGAGGYS AGLGVQESAA  300
GRLLFPFEDL KPAVSAAGGA NNNGADQYEH SKDQAGDGSG ASGVTTGGHE TPGFWSNSII  360
GNGSSNGGGG PW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G274400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824100.0KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953427.10.0dof zinc finger protein 2 isoform X1
SwissprotB9F1L81e-134DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A368PQN40.0A0A368PQN4_SETIT; Uncharacterized protein
STRINGSi017619m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-34Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]