PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G288400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 363aa    MW: 38454.1 Da    PI: 9.1231
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G288400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32180233255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sevir.1G288400.1.p 180 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 233
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28178233IPR009057Homeodomain-like
SuperFamilySSF466892.51E-15178234IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23180234IPR006447Myb domain, plants
PfamPF002491.9E-7181232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDTTSPATT TAAAAAVAAT TAPSLSFASS  60
APTTAVGFHA AAGGHHHHQA PGSHFGLPFL HHTQPILPEG GGGGGGLRDL ASMRPIRGIP  120
VYNTSQPLPF LQSHPHHHHH HQHCYDAIAG MGHSGGGPRS PKAAALRLAG APAKRGARAP  180
RMRWTTSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTIKTTDHK  240
PASASSYGQA GAKTIIDIPD DNLFDVTNTT SGSESSAQQS NPDGNDHGSS MCALWSNSSI  300
SSRGAWFHDK SIDATPGDIK SFEDVQSRSL DDVSNLNSSP FQVAGMFGRT KKPNLDFTLG  360
RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16181235357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G288400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369111e-134BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953561.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A368PSE60.0A0A368PSE6_SETIT; Uncharacterized protein
STRINGPavir.Aa01011.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-39G2-like family protein