PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G290800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 476aa    MW: 52862.9 Da    PI: 5.7041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G290800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11275321354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +a+ + Er RR+++N ++  Lr+l P++     +K++ a+i+  A+eYI++L
  Sevir.1G290800.1.p 275 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 321
                         68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.8E-12275333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8275321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9279330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.17E-8281326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MIAGGGYFDG SHDHILMEGS MIHDSSQSSI YDNTNAEQQN FIGLAPFSIE DHSSPANLTS  60
EPARVIDHIQ HQLGIGEEQD HSSHMIHEVP PVETANLVPA IYGVQDHIIS HQIGEGPHNI  120
TVEQQILDYD AASYQNGAYA AGHDLLNSLH IQRCSLTPEF PSTEHFFGGP EQNTVNHLDM  180
NNDLPGAAIH ESGIMFSDST LPSSYHATQS HMLKDLYHSL PQNYGLFTSD DERDGMIGIP  240
GVSGNTFQEI DGRQFENSIL GSRRQKGGLG KGKGKANFAT ERERREQLNV KYGALRSLFP  300
NPTKNDRASI VGDAIEYINE LNRTLKQLRI LMEKKRNSTD RRKKLKLDDE AADDGESSSM  360
QPVSDDQNNQ MNGPIRSSWV QRRSKECDVD VRIVDDEINI KFTEKKRANS LLCAAKVLEE  420
FHLELIHVVG GIIGDHHIFM FNTKIPKGSS VYVCAVAKKL LEAIEMKNQA LNIFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G290800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627970.0EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953537.20.0transcription factor EAT1
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLK3YY420.0K3YY42_SETIT; Uncharacterized protein
STRINGSi019192m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.26e-51bHLH family protein