PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G295100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 430aa    MW: 45886.1 Da    PI: 6.917
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G295100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.92.5e-28168220357
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                         ++rY+eCl+NhAa+lG+h++DGC+Efmps g+   aaal CaACgCHR+FHRre 
  Sevir.1G295100.1.p 168 QWRYRECLRNHAARLGAHVLDGCCEFMPSAGDG--AAALACAACGCHRSFHRREA 220
                         789**************************6666..99****************97 PP
2Homeobox17.38.2e-06323378152
                         TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +r Rt+ft++q e++ e+ +    + ++p+ e+     +++g++ r+ kvW +N +
  Sevir.1G295100.1.p 323 KRFRTKFTADQKERMREFAHrlgwRIHKPDSEAVDAFCAQVGVSRRVLKVWMHNNK 378
                         789***********987655888779****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-25169220IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-8170219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-23170219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.765171219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-30313381IPR009057Homeodomain-like
SuperFamilySSF466892.81E-19315379IPR009057Homeodomain-like
TIGRFAMsTIGR015655.7E-27322378IPR006455Homeodomain, ZF-HD class
CDDcd000860.00417323376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEEE EEEDEEEEEE DEDEAGGAHR YTTAAAAPVG VPQHQQQAHA  60
QALGLGSHSA SLIDAAAFSR PLLPPNSSLV TQPQLPPPGF MPSQRQPQLH PRRAERERER  120
AAGAPQPQPQ PRRHQEGARN GVLGGGNVAP PASTLALAAG AGAVEAAQWR YRECLRNHAA  180
RLGAHVLDGC CEFMPSAGDG AAALACAACG CHRSFHRREA VPGGVAAAVA AAVPPSPATP  240
TAGANANSSR VMPLLLAPPH MQTRPHVPPV SPSSAPAALT ESSSEELRGP APAHQPPPPP  300
TLPPHAQLAV GGSASAPPAP SKKRFRTKFT ADQKERMREF AHRLGWRIHK PDSEAVDAFC  360
AQVGVSRRVL KVWMHNNKHL AKIPPSPPSS QPALPPPPHH HDHHPPPPPH HIHHHHHHPA  420
PPPQQQHDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-223213901679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G295100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567590.0EU956759.1 Zea mays clone 1572892 zinc finger homeodomain protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953622.10.0zinc-finger homeodomain protein 7
SwissprotQ8S3Q94e-87ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A368PQH20.0A0A368PQH2_SETIT; Uncharacterized protein
STRINGSi020227m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.17e-23homeobox protein 33