PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G308800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NF-YB

Protein Properties

Length: 213aa MW: 22583.1 Da PI: 6.5085

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G308800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	105.6	3.4e-33	44	132	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 lP+an++r++++v+P+ k+s ak+++++c++ef++fv++ea++++++++r+ti+++d++ a+ lGf+dyv+p+++y ++y e ++ Sevir.1G308800.1.p 44 GLPMANLVRLIRQVIPKGVKVSTRAKHLTHDCAVEFVGFVAGEAAEQAKAQHRRTIAPEDFICAFQALGFDDYVQPMSTYTRRYHEHHN 132 59**********************************************************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-25	43	135	IPR009072	Histone-fold
Pfam	PF00808	7.1E-14	44	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.84E-21	45	134	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGRKGKRGAI REKKGGRDGE KAAPPADDDC ASSSDGEGGA AAAGLPMANL VRLIRQVIPK 60 GVKVSTRAKH LTHDCAVEFV GFVAGEAAEQ AKAQHRRTIA PEDFICAFQA LGFDDYVQPM 120 STYTRRYHEH HNNAARGYRG SFVPRPPPPP PDVAVAEEAA VTAPGVPCFS DEEMQYLRST 180 VPSLHGEQDD EGSSSAYSPT PAGHGYGYTG DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-22	45	129	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G308800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	1e-100	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684539.1	1e-155	nuclear transcription factor Y subunit B-1
TrEMBL	A0A368PR77	1e-154	A0A368PR77_SETIT; Uncharacterized protein
STRING	Si018339m	1e-154	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	5e-21	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Sevir.1G308800.1.p