PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G324800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 189aa MW: 21800.3 Da PI: 9.0862

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G324800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85	6.6e-27	65	115	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +++e +s++F +pik+AA+eL+v++TvLK++CR++GI+RWPhRk+ksl Sevir.1G324800.1.p 65 KKALTFELVSRHFCMPIKQAAQELNVGVTVLKKRCRELGIPRWPHRKVKSL 115 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.882	53	135	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-22	68	115	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MNLYELGCLS EVDFASFWAQ VEEDDARRKS KEGDCEKALI KLEPGSGSVQ KCAEMQGHRR 60 SVLGKKALTF ELVSRHFCMP IKQAAQELNV GVTVLKKRCR ELGIPRWPHR KVKSLQTLID 120 NIQELGKLTE QEDGNLTKSK VESLQQEKKL IEERPEVMLD ERTKELRQMC FKEKFKRRQQ 180 LIMGHGTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G324800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955211.2	1e-118	protein RKD3
Swissprot	Q9M9U9	9e-35	RKD1_ARATH; Protein RKD1
TrEMBL	A0A368PRC3	1e-121	A0A368PRC3_SETIT; Uncharacterized protein
STRING	Si019159m	1e-117	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.1G324800.1.p