PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G339300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 239aa    MW: 24662.4 Da    PI: 4.3926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G339300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-183483255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Sevir.1G339300.1.p 34 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 83
                        69****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-303391IPR001471AP2/ERF domain
PfamPF008475.2E-113483IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753491IPR001471AP2/ERF domain
CDDcd000183.84E-173492No hitNo description
SuperFamilySSF541713.14E-193492IPR016177DNA-binding domain
SMARTSM003801.0E-333497IPR001471AP2/ERF domain
PRINTSPR003675.7E-93546IPR001471AP2/ERF domain
PRINTSPR003675.7E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKGGAQLQD AAVDGAAGNA AAAAARQQGA GKRQYKGVRM RSWGSWVSEI RAPNQKTRIW  60
LGSYSTAEAA ARAYDAALLC LKGSAADLNF PVPLPFHIPA AAMSPKSIQR VAAAAAANAG  120
CSPLQPGAGA PYYSGAAAIN ATTPPCSYGD ASSGASSPET GNTGQYYEMA HDDIDMTGDA  180
DLAALADIEA FFQSPKCMEY AMMDPCSSFF APAPMATDAA NEWEEEGEIN LWSFSSVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-132491472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G339300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835321e-125BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954039.11e-172ethylene-responsive transcription factor ERF014
TrEMBLA0A368PRU61e-171A0A368PRU6_SETIT; Uncharacterized protein
STRINGSi020605m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-27ERF family protein