PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G364800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 423aa    MW: 44405.7 Da    PI: 5.294
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G364800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18339372134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Sevir.1G364800.2.p 339 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 372
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-15330395No hitNo description
SMARTSM004013.5E-16333383IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055333369IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-14337370IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.95E-14338395No hitNo description
PROSITE patternPS003440339364IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15339372IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASGGFVEEM MREQSLLEAT CGDLFDHIDD LLDFPKEESA ADVLLLDAPA PGSPLSARII  60
DVGARGNNAQ SAPAPPAMEP LMALPPPAAQ DDATAFFAAA GAPVFDAKDV GGHIGSCEEL  120
DMDMAQLEWL LFDDASIPHE PAFPGINCPA PIKSSALAAN NAGVALLPPE KMEDAIFRSS  180
SPISVLEHNS FNANNNVGSA SSSSSSASSS SESFSGSGGH AWSAPVSPRP EPPVLVIPAR  240
ARSKRSRPSA FTGAARAAEA PTILVPTPMY SSTSSHSDPE SIAESNPHQA PPMKKKKKAK  300
KPAPPAPAAS DAEGDNDGDA DYEEGGERSQ PQGGAVRRCT HCQIEKTPQW RAGPLGPKTL  360
CNACGVRYKS GRLFPEYRPA ASPTFVPSIH SNSHKKVVEM RQKAVRTGDP SCDLLQFIRR  420
RD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G364800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9662110.0EU966211.1 Zea mays clone 292603 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954283.10.0GATA transcription factor 8
RefseqXP_004954284.10.0GATA transcription factor 8
TrEMBLK3YSS20.0K3YSS2_SETIT; Uncharacterized protein
STRINGSi017314m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-37GATA family protein