PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G376900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 198aa    MW: 20741.5 Da    PI: 5.8859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G376900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-055072123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ykC+ C + F++   L  H+++H
  Sevir.1G376900.1.p 50 YKCTFCRRGFPTAQALGGHMNVH 72
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.74E-64776No hitNo description
Gene3DG3DSA:3.30.160.602.1E-44874IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.5335077IPR007087Zinc finger, C2H2
PfamPF139126.8E-65074IPR007087Zinc finger, C2H2
SMARTSM003550.00615072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDLSQETNKD EGARTSSPSG EADDDKEELM QKQQRAGSGD EDDEGTRQPY KCTFCRRGFP  60
TAQALGGHMN VHRRHRGRPA APAAAAQGSS SSCYEQQPYV YSTTRTMPVL AAFGQTHPAA  120
SGASMAAGGG LLHAAELQRP YELRLFGRDC AAGGRGKEGG AGDVHRDRCY ARDGDGGDHG  180
GGEELDLELR LGGAAGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G376900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718333e-54EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955289.11e-140zinc finger protein 7
TrEMBLK3YZ551e-139K3YZ55_SETIT; Uncharacterized protein
STRINGSi019563m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-08C2H2 family protein