PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G040200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 199aa    MW: 21620.5 Da    PI: 9.0045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G040200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.6e-1460102147
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaai 47 
                         s+y+GVr ++ +g+Wv+eI+dp     +   r +lg+f+tae+Aa a+ 
  Sevir.2G040200.1.p  60 SKYHGVRPRP-WGKWVVEIYDP-----HraVRKWLGTFDTAEDAACAYN 102
                         89*****999.**********7.....338***************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-2560120No hitNo description
PfamPF008472.3E-760101IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1960120IPR016177DNA-binding domain
SMARTSM003803.3E-2761124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2661120IPR001471AP2/ERF domain
PROSITE profilePS5103220.67961118IPR001471AP2/ERF domain
PRINTSPR003672.9E-96273IPR001471AP2/ERF domain
PRINTSPR003672.9E-984100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MIFQKGPQTL LQLVVEAPTA CACTTCGADG SSSDNDDGGD RAAVAGGVGK LRRRRRGRVS  60
KYHGVRPRPW GKWVVEIYDP HRAVRKWLGT FDTAEDAACA YNITVVVLRG RRAKLNFPDN  120
ASTSTYHRHH HLLQPLPESL HETCGSNASL PVHVALAAVA AAADGKHGAR SVSKVQDIWY  180
GLNEIMMMDD GSFWSFIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1662118663ATERF1
3gcc_A3e-1662118663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G040200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.11e-82ethylene-responsive transcription factor ERF112
TrEMBLK3YV482e-81K3YV48_SETIT; Uncharacterized protein
STRINGSi018144m4e-82(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-23related to AP2 6