PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G053600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 416aa    MW: 45004.7 Da    PI: 10.3325
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G053600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.22.4e-28161258297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                         ++ r+ws eDei++  +l++++ak+g+   + +d+ ++++++++++ +++s++ql++K+rrLK+K+k   ++a++g++p++ ++h+++++e
  Sevir.2G053600.1.p 161 RPPRVWSPEDEITIXSALVEYRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 251
                         578************************777888********************************************************** PP

              DUF573  91 lskkiWg 97 
                         lskk+Wg
  Sevir.2G053600.1.p 252 LSKKVWG 258
                         ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.0E-27163258IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPMQAAAAAA SRPLGAGTAR VPPATASTPM RTPTLAPAAA PHPRGAAASA PPASTPTRTP  60
TPAAACRPRG ATASAPPRLH SDSDSDNSAA ATGSEDDGAG AGDASSLPRA RRSSRIETSN  120
IKPVSTRPME APRRAPAGSS QRRSKRRHSS PGRASPEHQK RPPRVWSPED EITIXSALVE  180
YRAKKGQLPA SIQDTGKVHS QISGQLTANA STTQLSDKVR RLKHKYKLLF TRARNGRDPD  240
LPTQHERDVY ELSKKVWGFK SGDILGGSHA YEDTGDAESN EEQEIEESDD AMENGWEHHE  300
RPGKKPKAFR FENGNGNALA AVGRASHGNG SGXDDAEKGK QMYPYLWEAV AELSKEHPRG  360
PIFRKAFGVL EKSKAQAMEE KLRKFRMSEI RQQLHRMDLM KETMRMVLDA LEGSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G053600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702606.10.0STOREKEEPER protein
TrEMBLK3YH800.0K3YH80_SETIT; Uncharacterized protein
STRINGSi013598m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-13DNA-binding storekeeper protein-related transcriptional regulator