PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G060800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 208aa    MW: 23193.8 Da    PI: 9.4547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G060800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-0957101554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Sevir.2G060800.2.p  57 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 101
                         99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.39E-1050106No hitNo description
SuperFamilySSF474593.14E-1550111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7752101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1454112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-657101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-958107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MFRFLYFGEF WRLLLILVSY LQMFHAQPKP GEGAMAPQPP APRPKVRARR GQATDPHSIA  60
ERLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA  120
QLVADIPLSV KGEASDSGST QHIWEKWSTD GTEKQVAKLM EEDIGAAMQF LQSKALCMMP  180
ISLAMAIYDT QNPQDGHSLK PEPNTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G060800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955662.11e-133transcription factor UNE12
SwissprotO227681e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLK3ZVS31e-132K3ZVS3_SETIT; Uncharacterized protein
STRINGSi030704m1e-133(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]