PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G084800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 390aa    MW: 39918.8 Da    PI: 7.1286
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G084800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.76e-24266328163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ ++ e+
  Sevir.2G084800.1.p 266 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDSLKKACQDMEVEN 328
                         89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.4E-7133243No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-17261324No hitNo description
SMARTSM003383.4E-22266330IPR004827Basic-leucine zipper domain
PfamPF001703.9E-21266328IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047268331IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.0E-11269324No hitNo description
CDDcd147024.32E-22271322No hitNo description
PROSITE patternPS000360273288IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAT AAGVVVSAAP PQSHAEWAAS IQAYYAAAGH PYAWPAQHLM  60
AAAAAGAPFG TPVPFPVYHP GAAAAYYAHA SMAAGVPYPT AEAAAAAAAA AAAAATAAEA  120
KGKGKGGGAS PEKGSSGAPS GEDASRSGDS GSEESSGTRD DDTDHKDSSA PKKRKSGNTS  180
AEGEPSQTAL VRYAAVESPY PAKGRSASKL PVSAPGRAAL PNATPNLNIG MDLWSASPAL  240
AVPAVQVEAN PGLALARRDS VTQLDERELK RERRKQSNRE SARRSRLRKQ QECEELARKV  300
ADLTTENSAL RAELDSLKKA CQDMEVENSR LLGGVAHSQG PSVTTTLGMS IEPPKVQHHD  360
DEGQLHKNTS NNSNGNYAGG SHKAEANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282288RRSRLRK
2282289RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G084800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955801.10.0DNA-binding protein EMBP-1
SwissprotP250323e-64EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLK3ZU420.0K3ZU42_SETIT; Uncharacterized protein
STRINGSi030123m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-21basic region/leucine zipper transcription factor 16