PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G084800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 331aa    MW: 33956.3 Da    PI: 8.2326
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G084800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.14.6e-24207269163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ ++ e+
  Sevir.2G084800.2.p 207 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDSLKKACQDMEVEN 269
                         89********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165961.9E-774184No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-17202265No hitNo description
PfamPF001703.0E-21207269IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-22207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047209272IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11210265No hitNo description
CDDcd147026.84E-22212263No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAAAAGAPF GTPVPFPVYH PGAAAAYYAH ASMAAGVPYP TAEAAAAAAA AAAAAATAAE  60
AKGKGKGGGA SPEKGSSGAP SGEDASRSGD SGSEESSGTR DDDTDHKDSS APKKRKSGNT  120
SAEGEPSQTA LVRYAAVESP YPAKGRSASK LPVSAPGRAA LPNATPNLNI GMDLWSASPA  180
LAVPAVQVEA NPGLALARRD SVTQLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK  240
VADLTTENSA LRAELDSLKK ACQDMEVENS RLLGGVAHSQ GPSVTTTLGM SIEPPKVQHH  300
DDEGQLHKNT SNNSNGNYAG GSHKAEANTR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229RRSRLRK
2223230RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G084800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955801.10.0DNA-binding protein EMBP-1
SwissprotP250325e-61EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A368PYJ70.0A0A368PYJ7_SETIT; Uncharacterized protein
STRINGSi030123m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-21basic region/leucine zipper transcription factor 16