PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G089200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 229aa    MW: 24501.2 Da    PI: 9.1697
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G089200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC164.61.3e-51451501101
               NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                         ql++fw +q     + +a+dfknh+lPlarik i+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rt
  Sevir.2G089200.1.p  45 QLQAFWGYQrqeaeRASASDFKNHQLPLARIKMIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAMART 135
                         79****9996665556689************************************************************************ PP

               NF-YC  87 difdflvdivprdel 101
                         d+fdflvdivpr+e 
  Sevir.2G089200.1.p 136 DVFDFLVDIVPREEA 150
                         ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.38E-3130141IPR009072Histone-fold
PfamPF008085.5E-1969132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.0E-3670147IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDNQPLPYST GQPPATGGAP VPGVLGAAGP PPVPHHHLLQ QQQAQLQAFW GYQRQEAERA  60
SASDFKNHQL PLARIKMIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR  120
RTLQRNDVAA AMARTDVFDF LVDIVPREEA KEEPGSALGF AAAGPGAVGG GAAPAAGMPE  180
GRRRTSIRGP ATARKGKGLP QQAMAVPLDS LLLHLRALSD LLRSFVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-5053147395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G089200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857200.0BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds.
GenBankEU9572200.0EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds.
GenBankJX4285150.0JX428515.1 Zea mays subsp. mays clone pUT3114 CA5P11 CCAAT-HAP5 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984993.11e-124nuclear transcription factor Y subunit C-2
TrEMBLK4AE931e-122K4AE93_SETIT; Uncharacterized protein
STRINGSi037200m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.28e-62nuclear factor Y, subunit C4