PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G090300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 247aa    MW: 26810.5 Da    PI: 5.7048
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G090300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.83.8e-201663148
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        k+ien+  rqv fskRr+g++KKA+ELS+LC+a v  ++fs  g+ + 
  Sevir.2G090300.1.p 16 KPIENDQARQVCFSKRRQGLFKKASELSILCGAMVGTVVFSAIGRAFS 63
                        78***************************************9887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-29867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.922868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25981IPR002100Transcription factor, MADS-box
CDDcd002658.82E-35979No hitNo description
PRINTSPR004041.4E-181030IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231864IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-183045IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKGQKSKGR QKIEIKPIEN DQARQVCFSK RRQGLFKKAS ELSILCGAMV GTVVFSAIGR  60
AFSFGHPSFD EVVNRFLNPV APDVPAAGDA SNDNVGPPVT DTVHKLNMEY LELEQSLESE  120
KKRKERLQEA TEKEMGEPMM QWLNANIMEL GLDELQAFQK KLEEIHDIVK EKVNKVMVEG  180
RQTPGSLPQP PMEMGSTSQS ANPMASTAPS SSIALIDGFE AVNDPLLSGV HGVGGLGNVP  240
NNQTHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G090300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699030.10.0agamous-like MADS-box protein AGL29
TrEMBLK4A0040.0K4A004_SETIT; Uncharacterized protein
STRINGSi032189m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25AGAMOUS-like 62