PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G103700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 145aa    MW: 15967.2 Da    PI: 11.846
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G103700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP70.36.2e-2238108273
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                         a +kdrhsk+ T +g+RdR v l +++a++f+d+q  LG d++sk+ieWL+ +ak++   + ++ +++a+ +
  Sevir.2G103700.1.p  38 ARGKDRHSKVVTVRGLRDRHVQL-VPTAIQFYDIQYCLGIDQPSKAIEWLIHAAKTSTSSMLSLANTPAHTA 108
                         779********************.689******************************999999977776333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136918.0594097IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-2040103IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKEIGMERTA ASARTPRWTA ARWPPRRHGG RAGWRTAARG KDRHSKVVTV RGLRDRHVQL  60
VPTAIQFYDI QYCLGIDQPS KAIEWLIHAA KTSTSSMLSL ANTPAHTAPH LDPCAHHRSC  120
REPPAPHRHR LRGPVGESPR AGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-134597154Putative transcription factor PCF6
5zkt_B2e-134597154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G103700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959137.13e-99transcription factor TCP13-like
TrEMBLA0A368PXN67e-98A0A368PXN6_SETIT; Uncharacterized protein
STRINGPavir.J37910.1.p3e-26(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5831322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-21TCP family protein