PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G118400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 709aa    MW: 76116.7 Da    PI: 7.2056
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G118400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox505.1e-162776655
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55
                        ++ +eq++eL+++++++ +p++++r+ L +k+gL+ +qV++WFqN+Ra++
  Sevir.2G118400.1.p 27 RHAAEQIQELKAAYKQCDHPDEKARRALGAKIGLEASQVRFWFQNQRAQM 76
                        56789*******************************************86 PP
2START108.41.2e-341884213205
                         HHHHHHHHHHHHHHC-TT-EEEE..........EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
               START   3 aeeaaqelvkkalaeepgWvkss..........esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                         ae+ +++++ +a+ +ep+Wv+ +          ++ + ++ l + +++  +  ea r+ gvv +++a lv +l d + +W+et++     a
  Sevir.2G118400.1.p 188 AEASMDQFLMLATKGEPLWVLTPdgevlncqvyQKRTFPVLLGTCPDG--FVREATREAGVVRGAAAHLVGILTDAN-RWSETFPgvvaGA 275
                         6899*******************9866666666666666666666553..68*************************.*******999633 PP

                         EEEEEECTT......EEEEEEEEXXTTXX-.SSXEEEEEEEEEEE.TTS-EEEEEEEEE-......TTS--...-TTSEE.....-EESSE CS
               START  80 etlevissg......galqlmvaelqalsp.lvpRdfvfvRyirqlgagdwvivdvSvds......eqkppe..sssvvR.....aellpS 150
                         +  +v++ g      g +qlm+a+l + sp l++R + f+Ry++   +g w+++dvSvd        +k+    +s v+      ++llpS
  Sevir.2G118400.1.p 276 TAGNVVNVGvfaphnGLIQLMNANLWVQSPrLRNRSVNFLRYSKLTAEGHWAVMDVSVDAilglegSRKVDLnvDSDVMQawhkgCRLLPS 366
                         334455555777889**************95667************************963333222333336667777644444799*** PP

                         EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         g+l+e+++ng++kvtwv h+++++ +++ ++++l +sg a ga++w+a lqrqce
  Sevir.2G118400.1.p 367 GCLVEDMGNGYCKVTWVVHAEYDETTVPTMFKPLFRSGKAHGAQRWLASLQRQCE 421
                         ******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-131776IPR009057Homeodomain-like
PROSITE profilePS5007113.2641979IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-152073IPR009057Homeodomain-like
SMARTSM003891.4E-122283IPR001356Homeobox domain
CDDcd000865.54E-122376No hitNo description
PfamPF000461.2E-132776IPR001356Homeobox domain
PROSITE profilePS5084829.161177425IPR002913START domain
SuperFamilySSF559616.81E-20184422No hitNo description
SMARTSM002342.3E-10186422IPR002913START domain
CDDcd088755.22E-74188421No hitNo description
PfamPF018524.2E-27188421IPR002913START domain
SuperFamilySSF559615.5E-7443636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MNIDSANVDD DNDDVYIPEA PSKRPKRHAA EQIQELKAAY KQCDHPDEKA RRALGAKIGL  60
EASQVRFWFQ NQRAQMQAKA QVQDTKAVQQ EHAALMAENA SLRHAMLTMS CVACSGGTAP  120
AEPSPEKRRL LAENARLRDE HMRATALLHK ILLEAEAPPP SGRPVPAAST HSMLSAAVEG  180
RGALLRHAEA SMDQFLMLAT KGEPLWVLTP DGEVLNCQVY QKRTFPVLLG TCPDGFVREA  240
TREAGVVRGA AAHLVGILTD ANRWSETFPG VVAGATAGNV VNVGVFAPHN GLIQLMNANL  300
WVQSPRLRNR SVNFLRYSKL TAEGHWAVMD VSVDAILGLE GSRKVDLNVD SDVMQAWHKG  360
CRLLPSGCLV EDMGNGYCKV TWVVHAEYDE TTVPTMFKPL FRSGKAHGAQ RWLASLQRQC  420
EYLSALHSSH VPRSSHNTGT ISPMGRRGIM ELAQRMMASF YSAVSGPVTQ PSSSIDEWHG  480
SNGTGAERIA AAVRMVTWKK AGSMDGEPAG LVLSSSTTVW LPNTPPQLVF EYLCNGQCRG  540
EWDTFANGAA VEELGSVATG HLDGNAVSVL CPNVTDGINS KMLILQEART DASCSIVVYA  600
PVEEERMRAV MNGGDHASVD FLLPSGFAVL PDGHGKARRH APCTSEAPVG DGNTAGALLT  660
VACQALLPGS PSGEHTARAF DDVGGLLCRA IKKIKAAVKA KIVVASLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G118400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156326.10.0uncharacterized protein LOC100383907 isoform X2
TrEMBLK4A2G80.0K4A2G8_SETIT; Uncharacterized protein
STRINGSi033066m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-143HD-ZIP family protein