PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G131000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 167aa    MW: 18177.7 Da    PI: 6.657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G131000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.91.5e-116452159
                        -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                         rs ++C  + gCp++k+v++s+ dp+ +eitY + H+++
  Sevir.2G131000.1.p  6 RRSHFKCGRKsGCPARKQVQQSDADPSKLEITYFDAHTCD 45
                        59******999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007743.0E-6546IPR003657WRKY domain
PfamPF031063.9E-11545IPR003657WRKY domain
SuperFamilySSF1182901.31E-10547IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-11647IPR003657WRKY domain
PROSITE profilePS5081111.795747IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSCCSRRSHF KCGRKSGCPA RKQVQQSDAD PSKLEITYFD AHTCDNPPPS SSQVVPDPRI  60
ISSGTQRNTV QLVPVAAVPS AQRYVARPSP LPHPVADMMP RTTGVLLPEE QAELLFIPSP  120
ACSQSELLPT EVAKVEPHGP PVRMEHDVAR NDERVTISDF MVVPEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G131000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368PXZ05e-88A0A368PXZ0_SETIT; Uncharacterized protein
STRINGSi032748m3e-83(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-07WRKY DNA-binding protein 69