PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G139000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 174aa    MW: 19189.4 Da    PI: 4.7299
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G139000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB51.52.5e-1638137697
               NF-YB   6 rflPianvsrimkkvlP........anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                         ++lP a v r++k  l         a+  + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl+  l+
  Sevir.2G139000.1.p  38 EELPKAIVRRLVKDKLAhiagggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLNALDEMDFPEFVEPLRSSLQ 128
                         57888999999998886222222112345889999******************************************************** PP

               NF-YB  89 kyrelegek 97 
                         ++r+ ++++
  Sevir.2G139000.1.p 129 EFRNKNADR 137
                         ***998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-3333171IPR009072Histone-fold
PfamPF008083.2E-939111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.46E-2640163IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MARKRTKEAE PQPAAAAQEE PAPAPAAPAA AMTEAEVEEL PKAIVRRLVK DKLAHIAGGG  60
EGAEVIVNKD AMAAFAESAR IFIHYLSATA NDMCKESKRQ TINADDVLNA LDEMDFPEFV  120
EPLRSSLQEF RNKNADRRSE ANKKQKEKRR KLNEEPHPQN ENDPVDDAKE DDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A5e-114013018100DNA polymerase epsilon subunit D
5y27_A5e-114013018100DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136151RRSEANKKQKEKRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G139000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-165BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-165EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-165EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-165KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956211.11e-121DNA polymerase epsilon subunit 3
TrEMBLK3ZXF61e-119K3ZXF6_SETIT; Uncharacterized protein
STRINGSi031288m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-34nuclear factor Y, subunit B11