PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G139000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 150aa    MW: 16259.5 Da    PI: 5.3785
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G139000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.68.1e-1538131691
               NF-YB   6 rflPianvsrimkkvlP........anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                         ++lP a v r++k  l         a+  + kda     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl+  l+
  Sevir.2G139000.2.p  38 EELPKAIVRRLVKDKLAhiagggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLNALDEMDFPEFVEPLRSSLQ 128
                         57889999999998886222222112345889999****************************************************9998 PP

               NF-YB  89 kyr 91 
                         + +
  Sevir.2G139000.2.p 129 ETK 131
                         765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-2933147IPR009072Histone-fold
PfamPF008082.5E-939111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471136.38E-2540145IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MARKRTKEAE PQPAAAAQEE PAPAPAAPAA AMTEAEVEEL PKAIVRRLVK DKLAHIAGGG  60
EGAEVIVNKD AMAAFAESAR IFIHYLSATA NDMCKESKRQ TINADDVLNA LDEMDFPEFV  120
EPLRSSLQET KMQIEGQKQT KSKRKREGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G139000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605591e-129BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBankEU9626971e-129EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankEU9640461e-129EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBankKJ7283011e-129KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956211.13e-64DNA polymerase epsilon subunit 3
TrEMBLA0A0A9GDS44e-65A0A0A9GDS4_ARUDO; Uncharacterized protein
STRINGSi031288m1e-63(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-34nuclear factor Y, subunit B11