PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G141200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 658aa MW: 72756.6 Da PI: 8.2545

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G141200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	142	163	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Sevir.2G141200.1.p 142 KCTKCSREFCSSINFRRHTRVH 163 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	141	163	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	143	163	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MRARRSDDHW ARHGPERAFL FLSPPLPSIF LVRSTLGLPF LAASRRRQVE RPPLASSSSG 60 ASPVTSIRQL EMNASRKSSH VTTKDNAETA RDIISTSSQI QSMKVPDAVA AIAQAAAKAN 120 GETEKYLPGW PLFSPPKVQL DKCTKCSREF CSSINFRRHT RVHRRTLKVD KDFPKNRDHL 180 AAFWNKLTVD DASTILSLSD VVVEGVTGSS ILTALSSWMC KPGYASLPMA YARAGSELLD 240 LIQTKVSMQL PVSSNELFSV LDEASEKTFL CTNTAACIQK FLFDGEADKI ATELKNVVAC 300 ASYMLEQKLV EAWCAEKAAE ALRCQKLLVE EEEAAQKRQA ELMERKRMKK LRQKEQRLKD 360 LKDHDVAIQL PKIMDDATCS PGIQSFKAIS DPDLHEQEGS QYIQFPPPVT SETDNGFNAN 420 LLVEDVSCDS GPVMDKGAVL RPQVISRHHL GRTEKLAENS IISGSAVASK QLALARSSNY 480 RDPNVCSSPN RNKTWARKVQ AEIEKQCPKH GLDVDDEHNM APSKNSRVLI GSISVAIEDG 540 SEHLKDFRSK DDPVTPSTKT VKHASVKMMR PVTHVENKNE GIPHSDGNSV PAEEKHSCFS 600 GITDEKSYST CRSADLAEGE HLRRTVFSSK EATAFLSQRW KEAIAADHVK LVLCHDK*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MRARRSDDHW ARHGPERAFL FLSPPLPSIF LVRSTLGLPF LAASRRRQVE RPPLASSSSG  60
ASPVTSIRQL EMNASRKSSH VTTKDNAETA RDIISTSSQI QSMKVPDAVA AIAQAAAKAN  120
GETEKYLPGW PLFSPPKVQL DKCTKCSREF CSSINFRRHT RVHRRTLKVD KDFPKNRDHL  180
AAFWNKLTVD DASTILSLSD VVVEGVTGSS ILTALSSWMC KPGYASLPMA YARAGSELLD  240
LIQTKVSMQL PVSSNELFSV LDEASEKTFL CTNTAACIQK FLFDGEADKI ATELKNVVAC  300
ASYMLEQKLV EAWCAEKAAE ALRCQKLLVE EEEAAQKRQA ELMERKRMKK LRQKEQRLKD  360
LKDHDVAIQL PKIMDDATCS PGIQSFKAIS DPDLHEQEGS QYIQFPPPVT SETDNGFNAN  420
LLVEDVSCDS GPVMDKGAVL RPQVISRHHL GRTEKLAENS IISGSAVASK QLALARSSNY  480
RDPNVCSSPN RNKTWARKVQ AEIEKQCPKH GLDVDDEHNM APSKNSRVLI GSISVAIEDG  540
SEHLKDFRSK DDPVTPSTKT VKHASVKMMR PVTHVENKNE GIPHSDGNSV PAEEKHSCFS  600
GITDEKSYST CRSADLAEGE HLRRTVFSSK EATAFLSQRW KEAIAADHVK LVLCHDK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	350	ERKRMKKL
2	348	358	KKLRQKEQRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G141200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680015.1	0.0	uncharacterized protein LOC101770765
TrEMBL	A0A368PYS8	0.0	A0A368PYS8_SETIT; Uncharacterized protein
STRING	Si029321m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	9e-96	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Sevir.2G141200.1.p