PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G167600.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 418aa    MW: 46038.5 Da    PI: 8.2799
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G167600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.1e-11132161534
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                         k  rr+++NReAAr+sR+RKka+i++Le+ 
  Sevir.2G167600.4.p 132 KTLRRLAQNREAARKSRLRKKAYIQQLETS 161
                         788************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-8128190IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-8130172No hitNo description
PROSITE profilePS502178.829130173IPR004827Basic-leucine zipper domain
PfamPF001701.8E-8132161IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-7132166No hitNo description
PROSITE patternPS000360135150IPR004827Basic-leucine zipper domain
PfamPF141443.4E-29216289IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMPASSTMSK ESASYDMAEF DQSAIFLYLD GHDQEQRQTL NIFPSQPMHV AEPIPAKGVS  60
MGMVAAMMPN GNSSSPRRQE EGGQRSAPPP PAPAVPLPNS AKENRSSLTK KEATSGGKGA  120
TSGDQERVRD PKTLRRLAQN REAARKSRLR KKAYIQQLET SRIRLSQLEQ QVQVARVQGV  180
FLGAGEQPAG FPSAPSPAAV FDMEYGRWVE EHSKLMFQLR AALNEHMADE QLQAFVNGAM  240
AQHEELLNLK GAMARADVFH LLSGVWASPA ERCFLWLGGF RPSEVIKVML KHVEPLSEGQ  300
ILGIYNLQQS VQEREEALNH TMEATQQSIS DIVAAPDVAP ATFIGHMSLA MNKVASMESF  360
VLQADGLRQQ TLHKLHHILT TRQAARCMVA IADYFHRLRA LSTLWVARPR QEDGPGL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G167600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698770.10.0transcription factor TGAL7 isoform X2
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLK3ZTN60.0K3ZTN6_SETIT; Uncharacterized protein
STRINGSi029966m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-131bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]