PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G173200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 357aa    MW: 38198.7 Da    PI: 6.3326
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.8e-33137191155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl
  Sevir.2G173200.1.p 137 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 191
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.738134194IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-31134192IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24137192IPR006447Myb domain, plants
SuperFamilySSF466893.4E-16137193IPR009057Homeodomain-like
PfamPF002492.7E-8139190IPR001005SANT/Myb domain
PfamPF143791.5E-20232278IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGAFQLQPPE LHNSREGRGG REREQGGREE SLPVESGSSS REARTSKKGE RESRGTFPWI  60
GSFAFAAEEG GEEGPVSPLS AAAESSRSQE GAEEEEMFPP GLIHHRPDGP APGDGAPRSG  120
PGGGPGGPSL VLTADPKPRL RWTADLHERF VDAVAQLGGP EKATPKTILR TMGVKGLTLF  180
HLKSHLQKYR LGKQSGKEGS EQSKDASYLL DAQSGMSVSP RVAAQDVKES QEVKEALRAQ  240
MEVQRRLHEQ VEVQKRVQIR MEALQKYIDS ILESACKMVT EQFASSGFSI SDPDLPEISP  300
GGVMCGPTDT LSSSVFNQLS VSSIDSHSPG GKPSPSGIEG PPMLLQKSPE LKRRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-19137193258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G173200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804279.10.0protein PHR1-LIKE 2-like
SwissprotQ8LAJ79e-72PHL3_ARATH; Protein PHR1-LIKE 3
SwissprotQ94A571e-71PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLK3ZV100.0K3ZV10_SETIT; Uncharacterized protein
STRINGSi030441m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-72G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]