PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G174000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 160aa    MW: 17806.9 Da    PI: 9.6547
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G174000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-142976350
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                        e++r rrk++NRe+ArrsR+RK++ ++ L+  vk+L+ +Nk+L   l+
  Sevir.2G174000.1.p 29 ERRRKRRKESNRESARRSRLRKQQHLDDLTSQVKQLKDQNKQLSMALS 76
                        789****************************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-112275No hitNo description
SMARTSM003389.5E-132791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1392992IPR004827Basic-leucine zipper domain
PfamPF001703.6E-122975IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-113181No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
CDDcd147022.86E-143880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSGTSSGSS LGTRSSRSED DLDLQAQMER RRKRRKESNR ESARRSRLRK QQHLDDLTSQ  60
VKQLKDQNKQ LSMALSITSQ NLVAVQAQNS VLQTQKMELD SRLGALTEIL CYMNTITSTS  120
ASAPTNPAMV NNITSSNSYD LLGANCTWNQ QPIDLYQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935RRRKRRK
22936RRRKRRKE
33136RKRRKE
44349RRSRLRK
54350RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G174000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670531e-118BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds.
GenBankKJ7275581e-118KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956521.11e-113bZIP transcription factor 44
TrEMBLK3ZXM11e-111K3ZXM1_SETIT; Uncharacterized protein
STRINGSi031353m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-14basic leucine-zipper 44