PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G181400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 1393aa    MW: 156615 Da    PI: 7.57
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G181400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.5e-2511301190259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDg++WrKYGqKe+ gs++pr+Y+rCt +   gC+++k+v+r++ dp+++ + Y geH+++
  Sevir.2G181400.1.p 1130 DDGHSWRKYGQKEIPGSKHPRAYFRCTDRhsiGCNATKQVQRTDGDPNLFAVRYYGEHTCD 1190
                          7**************************98889***************************96 PP
2WRKY573.7e-1812451305259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDgy W+ Y + ++ g+++prsYY C  +   gC+++k+v+r++ dp v++++Y+geH+++
  Sevir.2G181400.1.p 1245 DDGYFWKEYVREDILGAKYPRSYYHCVCRhteGCRATKQVQRTDADPLVFDVIYNGEHTCK 1305
                          7*************************9777789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.89E-50282550IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-48295576IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.2E-12309465IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003647.6E-13316331No hitNo description
PRINTSPR003647.6E-13388402No hitNo description
PRINTSPR003647.6E-13485499No hitNo description
Gene3DG3DSA:3.80.10.107.2E-12648940IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.33E-186481012IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.6E-13787803No hitNo description
Gene3DG3DSA:2.20.25.804.8E-2411221190IPR003657WRKY domain
PROSITE profilePS5081122.13611241192IPR003657WRKY domain
SMARTSM007745.3E-3311291191IPR003657WRKY domain
SuperFamilySSF1182907.19E-2311291191IPR003657WRKY domain
PfamPF031061.9E-2411301190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-1912361306IPR003657WRKY domain
SuperFamilySSF1182901.24E-1612401306IPR003657WRKY domain
SMARTSM007742.1E-2012441306IPR003657WRKY domain
PfamPF031069.6E-1912451305IPR003657WRKY domain
PROSITE profilePS5081118.24612451302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1393 aa     Download sequence    Send to blast
MAATAPVRIP HVGVANALHL PSSSAGSHVV AESPLPPTTD AQPHPPPLRP TPLSSRHVML  60
EGCRLTSPVM MPCSDVLILI GIRQEVASNL VDSTARDLSS STEKLLGLQE ISSMEDQTRP  120
LDGTIWKLPG KLSRLLCHGC ILPKGVENEI PLIKHDLEEI LAILSNLDDD HAMMVRCWRK  180
EVRELSYDIE DFINQYEHAK AGSWTGSIPR RKIIQRHNSR TTLYRLREKL RHRLWIANKI  240
REFSVRSQEV LQRHSMYNLN SIAGSSSRRC AGAHFTSSHP TPCWDGNTPI GISATMDKLE  300
ERLMKMYDEG HQKLKVVSIV GFGGIGKTTL ANELYRKLGR QFECRAFLRT SQKPDMRRIL  360
ISMLSQVRPQ QSPDNWTVHS LISTIRTHLQ DKRYFVIVED LWATSTWDIL KCALPDDSCC  420
SRILMTTEIE DLALQSCGYD PNYIFKLNPL GEDDSRKLFF SSVFGPQQEC PPEHREVYCD  480
IIRKCGGLPL AIVTIASIFA GQLNVKEQMD YLNKSLGCSL ITNATLEGIK QVIDLSYNNL  540
PQHLKACILY TGLYEEDIII WRDDLVNQWI AEGFICATGG QDKQEISRAY FDELVGRKMI  600
QPVHTNDNGE VLSCVVHYMV LNLIVTYKSM EENFITVVHH SQANSTLADK VRRLSLHFGN  660
AEDVIPPSNM RLSQVRTLVY FGVCRCMPYI LQFHLLQVLI LHFWGDKDNI SWDLTRISEL  720
FRLRYLMVSS NVTLDLRTQM HGLQYLETLK IDARVRAVPS DIVHLSGLLN LSLPTQTNLP  780
SRMGHMTSLR TLEYFDLSTN TMENVQSLIT LSNLRELQLT CSTVQPENLN NKMQFLLNSI  840
GRLSNLTSLN LVPRTSSCAN SLDDAGAASI TVSDSISSMP TPTLLQSLEV SPRICIFLCL  900
PKWIGQLCKL CTLKVGVRKL ARNDIDVLRG MPLLAVLSLY VHTKPASRIV IGKTGFPVIR  960
YFKFKCCDPL LKFEEDAMPH LRKLKLVFNA HSADLQSTIP VGIDFLSELK EFSVKIGGAG  1020
PDKSHRRAAE LAIREAIMVH GRCQRVNVRC VQHIIGGKEG QSCITTHDDH DSYEHDEIMP  1080
DNSGQEVLCA VKEAGTIPLP GKKEGNNDAD NRKRRKTLVK DILTSSSDGD DGHSWRKYGQ  1140
KEIPGSKHPR AYFRCTDRHS IGCNATKQVQ RTDGDPNLFA VRYYGEHTCD YRSETTVRVE  1200
MEQSSITELG VNSVNPSTSS ACSTSSVSSR RSMIRGNVKT SKPDDDGYFW KEYVREDILG  1260
AKYPRSYYHC VCRHTEGCRA TKQVQRTDAD PLVFDVIYNG EHTCKQTAHF TDENKSLSVP  1320
LDPPTPGLSE MLSAEDTAKI SFDKFRGLFN DDCPIKGKID VDTPWGNMKL PISKEGGTTR  1380
IKKEEEDDGN DN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C5e-3618162564496Disease resistance RPP13-like protein 4
6j5t_F5e-3618162564496Disease resistance RPP13-like protein 4
6j5t_G5e-3618162564496Disease resistance RPP13-like protein 4
6j5t_L5e-3618162564496Disease resistance RPP13-like protein 4
6j5t_O5e-3618162564496Disease resistance RPP13-like protein 4
6j5u_A5e-3618162564496Disease resistance RPP13-like protein 4
6j5v_A5e-3618162564496Disease resistance RPP13-like protein 4
6j5w_A5e-3618162564496Disease resistance RPP13-like protein 4
6j6i_C5e-3618162564496Disease resistance RPP13-like protein 4
6j6i_F5e-3618162564496Disease resistance RPP13-like protein 4
6j6i_G5e-3618162564496Disease resistance RPP13-like protein 4
6j6i_L5e-3618162564496Disease resistance RPP13-like protein 4
6j6i_O5e-3618162564496Disease resistance RPP13-like protein 4
6s2p_N1e-372826233339NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G181400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956573.10.0putative disease resistance RPP13-like protein 2 isoform X1
TrEMBLA0A368PZX70.0A0A368PZX7_SETIT; Uncharacterized protein
STRINGSi028710m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-24WRKY DNA-binding protein 46