PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G181400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 969aa    MW: 108751 Da    PI: 6.875
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G181400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.34.2e-25706766259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqKe+ gs++pr+Y+rCt +   gC+++k+v+r++ dp+++ + Y geH+++
  Sevir.2G181400.3.p 706 DDGHSWRKYGQKEIPGSKHPRAYFRCTDRhsiGCNATKQVQRTDGDPNLFAVRYYGEHTCD 766
                         7**************************98889***************************96 PP
2WRKY57.62.4e-18821881259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy W+ Y + ++ g+++prsYY C  +   gC+++k+v+r++ dp v++++Y+geH+++
  Sevir.2G181400.3.p 821 DDGYFWKEYVREDILGAKYPRSYYHCVCRhteGCRATKQVQRTDADPLVFDVIYNGEHTCK 881
                         7*************************9777789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.24E-172126IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.2E-2116152IPR002182NB-ARC
SuperFamilySSF520586.46E-19224588IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-6285382IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.3E-7383567IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.803.1E-24698766IPR003657WRKY domain
PROSITE profilePS5081122.136700768IPR003657WRKY domain
SuperFamilySSF1182904.58E-23705767IPR003657WRKY domain
SMARTSM007745.3E-33705767IPR003657WRKY domain
PfamPF031061.2E-24706766IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-19812882IPR003657WRKY domain
SuperFamilySSF1182907.98E-17816882IPR003657WRKY domain
SMARTSM007742.1E-20820882IPR003657WRKY domain
PROSITE profilePS5081118.246821878IPR003657WRKY domain
PfamPF031066.2E-19821881IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MTTEIEDLAL QSCGYDPNYI FKLNPLGEDD SRKLFFSSVF GPQQECPPEH REVYCDIIRK  60
CGGLPLAIVT IASIFAGQLN VKEQMDYLNK SLGCSLITNA TLEGIKQVID LSYNNLPQHL  120
KACILYTGLY EEDIIIWRDD LVNQWIAEGF ICATGGQDKQ EISRAYFDEL VGRKMIQPVH  180
TNDNGEVLSC VVHYMVLNLI VTYKSMEENF ITVVHHSQAN STLADKVRRL SLHFGNAEDV  240
IPPSNMRLSQ VRTLVYFGVC RCMPYILQFH LLQVLILHFW GDKDNISWDL TRISELFRLR  300
YLMVSSNVTL DLRTQMHGLQ YLETLKIDAR VRAVPSDIVH LSGLLNLSLP TQTNLPSRMG  360
HMTSLRTLEY FDLSTNTMEN VQSLITLSNL RELQLTCSTV QPENLNNKMQ FLLNSIGRLS  420
NLTSLNLVPR TSSCANSLDD AGAASITVSD SISSMPTPTL LQSLEVSPRI CIFLCLPKWI  480
GQLCKLCTLK VGVRKLARND IDVLRGMPLL AVLSLYVHTK PASRIVIGKT GFPVIRYFKF  540
KCCDPLLKFE EDAMPHLRKL KLVFNAHSAD LQSTIPVGID FLSELKEFSV KIGGAGPDKS  600
HRRAAELAIR EAIMVHGRCQ RVNVRCVQHI IGGKEGQSCI TTHDDHDSYE HDEIMPDNSG  660
QEVLCAVKEA GTIPLPGKKE GNNDADNRKR RKTLVKDILT SSSDGDDGHS WRKYGQKEIP  720
GSKHPRAYFR CTDRHSIGCN ATKQVQRTDG DPNLFAVRYY GEHTCDYRSE TTVRVEMEQS  780
SITELGVNSV NPSTSSACST SSVSSRRSMI RGNVKTSKPD DDGYFWKEYV REDILGAKYP  840
RSYYHCVCRH TEGCRATKQV QRTDADPLVF DVIYNGEHTC KQTAHFTDEN KSLSVPLDPP  900
TPGLSEMLSA EDTAKISFDK FRGLFNDDCP IKGKIDVDTP WGNMKLPISK EGGTTRIKKE  960
EEDDGNDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21706765968OsWRKY45
6j5t_C3e-1826201318496Disease resistance RPP13-like protein 4
6j5t_F3e-1826201318496Disease resistance RPP13-like protein 4
6j5t_G3e-1826201318496Disease resistance RPP13-like protein 4
6j5t_L3e-1826201318496Disease resistance RPP13-like protein 4
6j5t_O3e-1826201318496Disease resistance RPP13-like protein 4
6j5u_A3e-1826201318496Disease resistance RPP13-like protein 4
6j5v_A3e-1826201318496Disease resistance RPP13-like protein 4
6j5w_A3e-1826201318496Disease resistance RPP13-like protein 4
6j6i_C3e-1826201318496Disease resistance RPP13-like protein 4
6j6i_F3e-1826201318496Disease resistance RPP13-like protein 4
6j6i_G3e-1826201318496Disease resistance RPP13-like protein 4
6j6i_L3e-1826201318496Disease resistance RPP13-like protein 4
6j6i_O3e-1826201318496Disease resistance RPP13-like protein 4
6s2p_N1e-1823199164339NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G181400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956574.10.0putative disease resistance RPP13-like protein 2 isoform X2
TrEMBLK3ZQ300.0K3ZQ30_SETIT; Uncharacterized protein
STRINGSi028710m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-24WRKY DNA-binding protein 46