PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G209800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 174aa MW: 18462.7 Da PI: 7.8564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G209800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ F++ L H+++H Sevir.2G209800.1.p 41 HICGYCKREFRSAQGLGGHMNVH 63 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-5	39	67	No hit	No description
PROSITE profile	PS50157	9.619	41	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.1E-6	41	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MERDDGYTKL QQLPCSDNFS LAASSSWPSP QIRSSSSATS HICGYCKREF RSAQGLGGHM 60 NVHRLDRARL IHHQCSSHHH LALAAPPPNP NPSRAVVELM SSGCRAHGAA SDGGSAVPPA 120 AKPGVCRFSL ASSSSALTKD IEAIKNLELR MGACSHGDDA EERLDLELRL GHS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G209800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956784.1	1e-124	transcriptional regulator SUPERMAN
TrEMBL	A0A368Q1F4	1e-122	A0A368Q1F4_SETIT; Uncharacterized protein
STRING	Si032740m	1e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22243	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	5e-12	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G209800.1.p