PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G222600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 143aa    MW: 15306.2 Da    PI: 9.568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G222600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000172446123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C +C++ F ++  L  H++ H
  Sevir.2G222600.1.p 24 FVCMYCDRKFFSSQALGGHQNAH 46
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.05E-81569No hitNo description
PROSITE profilePS5015710.722451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEQELNLELT LFHPSASPEP PGYFVCMYCD RKFFSSQALG GHQNAHKYER SLAKRRREIA  60
AALRAHGAAA SGARDAAAAA ARPGDTGAAG VFVAEDKRAR MDKQQPAAVA APAPALPTNK  120
RRSSERGYGV ERADELDLSL RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G222600.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724029e-88EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956890.18e-99uncharacterized protein LOC101776967
TrEMBLA0A368Q1I92e-97A0A368Q1I9_SETIT; Uncharacterized protein
STRINGPavir.J15401.1.p4e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-15zinc finger protein 2