PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G238900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 242aa    MW: 26002.6 Da    PI: 6.7926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G238900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09161201954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Sevir.2G238900.1.p 161 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 201
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-14156214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6162201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-6174206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEFDLMNYSP EAQLELMNTM LQLEQLTALD GCQSLMAPVS PPISPVQTHA THCFSPPPHM  60
STTTAATCYA DQYTPLAAYA GSTGLEHRQV DYVLSPGGAA DATAGAVAQA GSSSPTSSAD  120
AMREVIFHIA ALQPVEIDPE AVRPPKRRNV RISKDPQSVA ARLRRERISE RIRTLQRLVP  180
GGTKMDTASM LDEAIHYVKF LKSQVQSLER AAAATHRAAA LGAAYPALHA PWQYALPHGD  240
M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RPPKRR
2161166RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G238900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561560.0EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957004.11e-178transcription factor bHLH69
TrEMBLK3ZWI41e-176K3ZWI4_SETIT; Uncharacterized protein
STRINGSi030966m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-42bHLH family protein