PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G245100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 214aa    MW: 22439.5 Da    PI: 8.5155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G245100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-133278354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  Sevir.2G245100.1.p 32 RSHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 78
                        68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4912978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-133284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-113279No hitNo description
Gene3DG3DSA:4.10.280.103.6E-143281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-113278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-123584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.74E-5123188No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-6127187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVPVGSDEAD MAAMDAECSP PAAAATRSGP SRSHSEAERK RRQRINAHLA TLRTLLPAAS  60
RMDKAALLGE VVRHVRELRG EADAAAAGAA VAVPGEGDEV GVEEGQHCCC HGAGERAATT  120
RRVRAWVCCA DRPGLMSELG RAVRSVSARA VRAEIATVGG RTRSVLELDV GEGASSSRPA  180
LQAALRAVLL SREDLLAAEC YKRQRFSAHL ARV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G245100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279681e-168KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957057.11e-145transcription factor bHLH30
RefseqXP_012699568.11e-145transcription factor bHLH30
TrEMBLK4A2H91e-144K4A2H9_SETIT; Uncharacterized protein
STRINGSi033077m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.15e-17bHLH family protein