PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G248500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 334aa    MW: 35141.7 Da    PI: 7.5424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G248500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.5e-14119170155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P+a   ++++ + a+i+  A++++k+L+
  Sevir.2G248500.2.p 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPA---YAQRGDQASIVGGAINFVKELE 170
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-13117174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-14117174No hitNo description
SuperFamilySSF474594.06E-17118185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.809118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MALEAVVLAV SQQQGGRFGC GAMAGGPWNG LLGGAEGVMG LSGAGAGSWD AAACSSSMLL  60
RGFQEPDNIL AAVAPPVESG GSVGQEAPAA ATSPAPAPTG RRKRRRTRVV KNKEEVESQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPAYA QRGDQASIVG GAINFVKELE QLLQSLEARR  180
RSAQGPAAGA SGDDGAAPFA GFFTFPQYSM RAAAAPEHAP ADATSRKCAE GEEASGSKPS  240
AVADVEATMV ESHANLRVLS RRRPRQLLRL VVGLQDHRLT VLHLNMSSAG QMVLYSFSLK  300
VEDDCQLTSV DEIAAAAHQI VEKTHQEQGC SLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G248500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957080.10.0transcription factor bHLH94-like
SwissprotQ9C7T44e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A368Q2B80.0A0A368Q2B8_SETIT; Uncharacterized protein
STRINGPavir.Bb02386.1.p1e-154(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]