PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G259400.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 434aa    MW: 46390.3 Da    PI: 6.3919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G259400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.5e-33246304159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Sevir.2G259400.4.p 246 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 304
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-37231306IPR003657WRKY domain
SuperFamilySSF1182903.66E-29238306IPR003657WRKY domain
PROSITE profilePS5081137.539241306IPR003657WRKY domain
SMARTSM007744.0E-38246305IPR003657WRKY domain
PfamPF031061.5E-25247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVVWRSAGLR EQAQPSPTTG TLPFLMATND KSTVPPAAII TEDSTFDNDV FSFQPHLGSK  60
QQSFCTAEKD YGAHFQNQSL SNIHRQESSL QSSFTAVKDN TNATIVKAKA SDSMFGNSHY  120
SAGQQQDDET NQNAQSEGVD IRAAACVPVS THCDASLMES QDAVDVSSTL SNEEDERATH  180
GTASIECEGD EDETESKRRK LDALGTSTIT TAVATPTSTI DMGTAASRAV REPRVVVQTT  240
SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCSVR KHVERASHDL KSVITTYEGK  300
HNHEVPAARN SGQAGSSSAN APSASQGSSS HRRQEPAQAS FAHFGASAPF GSFVLPPSSQ  360
LGPATGNFRF GMVPPGMAIP MPSLGSLAPT KMVGNSSAMQ GYPGLMMPVE PKAEPAPPVY  420
QQMMSRPPFG HQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38237307878Probable WRKY transcription factor 4
2lex_A1e-38237307878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G259400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957146.10.0probable WRKY transcription factor 2
RefseqXP_022680444.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-61WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLK3ZRW20.0K3ZRW2_SETIT; Uncharacterized protein
STRINGSi029342m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.19e-57WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]