PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G279100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 247aa MW: 26932.2 Da PI: 10.7494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G279100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.1	2e-37	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d +++PwdLp a+e e yfFs r+ + +g ++r + sgyWkatgk+ Sevir.2G279100.1.p 11 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDGARLDPWDLPG---ASEGEGYFFSLRRAPAMgRGGGRRRRAGSGYWKATGKE 97 79**************************.8899998*******3...35668899998876554355555566799***** PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+ + ++ lvg+k+ L+f+ ++p++++t Wvmheyrl Sevir.2G279100.1.p 98 KPVFLQcggkRQLLVGVKTALAFH-RSEPSSSRTGWVMHEYRL 139 *987655555******.5788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-45	8	172	IPR003441	NAC domain
PROSITE profile	PS51005	44.947	11	172	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKALSRPLPA AVIPVVHDGA RLDPWDLPGA 60 SEGEGYFFSL RRAPAMGRGG GRRRRAGSGY WKATGKEKPV FLQCGGKRQL LVGVKTALAF 120 HRSEPSSSRT GWVMHEYRLA VPGGAAEQRK NASHDCVVEP GGEWVVCRVF LKNRPRSRPN 180 RDVDGKNPGN RASTAHRAAP LQHRGDAGRQ QPSSSSCVTG VTDISDQDEV SSNSIRDAPA 240 ASQRED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	11	172	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	11	172	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	11	172	20	168	NAC domain-containing protein 19
3swm_B	1e-31	11	172	20	168	NAC domain-containing protein 19
3swm_C	1e-31	11	172	20	168	NAC domain-containing protein 19
3swm_D	1e-31	11	172	20	168	NAC domain-containing protein 19
3swp_A	1e-31	11	172	20	168	NAC domain-containing protein 19
3swp_B	1e-31	11	172	20	168	NAC domain-containing protein 19
3swp_C	1e-31	11	172	20	168	NAC domain-containing protein 19
3swp_D	1e-31	11	172	20	168	NAC domain-containing protein 19
4dul_A	1e-31	11	172	17	165	NAC domain-containing protein 19
4dul_B	1e-31	11	172	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G279100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM017008	1e-146	KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957303.1	1e-178	NAC domain-containing protein 41
Swissprot	O22798	3e-48	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	K3ZWG0	1e-177	K3ZWG0_SETIT; Uncharacterized protein
STRING	Si030942m	1e-178	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	7e-44	NAC domain containing protein 41

Link Out ? help Back to Top
Phytozome	Sevir.2G279100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]