PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G289200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 333aa MW: 33960.7 Da PI: 4.4055

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G289200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.9	1.1e-31	73	149	7	83
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 r ++hTkv+gR+RR+R+ a+caar+ L++ LG+++d++t+ WLlqq++pai+++tgt++ +a +++ ++ + Sevir.2G289200.1.p 73 RYRDRHTKVEGRGRRIRMAAPCAARVARLTRDLGHKSDGETVRWLLQQSEPAIIAATGTGTVPAIAVTGSDGVLRLP 149 678********************************************************988886663333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.471	74	128	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.1E-25	75	137	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MESRAPGRDE EDAEALFLAA EAVGNGAAAA VTVAVDAMGS VQADGSGLPK PEPVPVEFLG 60 GGLQLANPRP APRYRDRHTK VEGRGRRIRM AAPCAARVAR LTRDLGHKSD GETVRWLLQQ 120 SEPAIIAATG TGTVPAIAVT GSDGVLRLPA EPPPADADGE QQDPAPKRRR KLQPTRAAAG 180 PSAPAPAAYY PFVADPLLQA NGGGAISISS GLAPASAPAG PAGAIPFLAI PAPAPGASGD 240 GKQVIPTAAM WMVPQQVGAA GAANQPTHFW AFPTNPELFN VGNFQQQAVY DAEQLAGNGD 300 SEDQQFGGHQ IGEGEGEGED EEIAVTDSSS EE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	171	PKRRRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G289200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957394.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	6e-79	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	6e-79	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A368Q3H9	0.0	A0A368Q3H9_SETIT; Uncharacterized protein
STRING	Si030591m	1e-172	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	8e-34	TCP family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G289200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]