PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G289700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 227aa    MW: 24079.8 Da    PI: 4.8518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G289700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-153993155
                 AP2  1 sgykGVrwdkkrgr..WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr++ + g   Wv+e+r+p   g +  r +lg+f t+e Aa+a++aa+ +l g
  Sevir.2G289700.1.p 39 PVFRGVRRRGQAGAgrWVCELRVP---GrRGSRLWLGTFATPELAARAHDAAAIALSG 93
                        579******9988788*******9...6455**********************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-93993IPR001471AP2/ERF domain
SMARTSM003801.7E-1840107IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1740103IPR016177DNA-binding domain
PROSITE profilePS5103220.90340101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2640103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDTPSPPPSS AEQEEYRTVW SAPPKKPAGR TKFRETRHPV FRGVRRRGQA GAGRWVCELR  60
VPGRRGSRLW LGTFATPELA ARAHDAAAIA LSGRAACLNF ADSAWLLPPL MPAALASARE  120
VRDAVAEAIG AFRRRSEESA SAAASPAAET TADEDEEGSG SSGATPSLDV TFELDDMFRF  180
GGMVDSGSYY ESLAQGLLVD APAAAGAGAW WEDVEHGTVD IALWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G289700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957401.11e-159dehydration-responsive element-binding protein 1B
SwissprotQ3T5N41e-61DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
SwissprotQ8GUW42e-61DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLA0A368Q3Z61e-158A0A368Q3Z6_SETIT; Uncharacterized protein
STRINGPavir.Ba01283.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-22C-repeat/DRE binding factor 2