PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G289800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 257aa    MW: 26992 Da    PI: 5.1417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G289800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.2e-1557107153
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                         + ++GVr++   grWv+e+r+p ++g  +r +lg++  ae Aa+a++aa+++l
  Sevir.2G289800.1.p  57 PVFRGVRRRGAAGRWVCEVRVPGNRG--ARLWLGTYVAAESAARAHDAAMLAL 107
                         579******************95554..**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-1157107IPR001471AP2/ERF domain
SMARTSM003806.5E-1358126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2358122IPR001471AP2/ERF domain
PROSITE profilePS5103219.57258120IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1358121IPR016177DNA-binding domain
CDDcd000186.97E-1759122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDMGRLELSP SSSSTSASSS SSDHNNKAVW SPSSSSSPQP AKKRPAGRTK FRETRHPVFR  60
GVRRRGAAGR WVCEVRVPGN RGARLWLGTY VAAESAARAH DAAMLALGRG RSGPGCLNFP  120
DSAWLLAVSP PSALSGLDDA RRAALEAVAD FQRRFEAAAS GAAVDEVTSR VSAPPPLPDI  180
VSGSAATSLE QVPVKADEPA ALDVEAFEPD WFGDMDLDTY YASLAEGLLM EPPPPAAAWE  240
HGDFGDGGAD VALWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G289800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8535841e-139JN853584.1 Sorghum bicolor genotype CSV216R dehydration responsive element binding protein 1A (DREB1A) gene, complete cds.
GenBankJN8535851e-139JN853585.1 Sorghum bicolor genotype M35 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds.
GenBankJN8535861e-139JN853586.1 Sorghum bicolor genotype R16 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds.
GenBankJN8535891e-139JN853589.1 Sorghum halepense dehydration responsive element binding protein 1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957402.10.0dehydration-responsive element-binding protein 1H
SwissprotA2Z3882e-63DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0902e-63DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLK3ZW871e-180K3ZW87_SETIT; Uncharacterized protein
STRINGSi030869m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-24C-repeat/DRE binding factor 2