PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G290900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 227aa    MW: 23499.2 Da    PI: 9.6079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G290900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-182474256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +g WvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Sevir.2G290900.1.p 24 RFVGVRQRP-SGPWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 74
                        589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-272481IPR001471AP2/ERF domain
PfamPF008473.1E-132474IPR001471AP2/ERF domain
CDDcd000183.91E-262481No hitNo description
SMARTSM003802.5E-312487IPR001471AP2/ERF domain
PROSITE profilePS5103219.7832481IPR001471AP2/ERF domain
PRINTSPR003671.0E-72536IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-182581IPR016177DNA-binding domain
PRINTSPR003671.0E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAAQQESGSR AATATAATAC RGRRFVGVRQ RPSGPWVAEI KDSAQRVRLW LGTFDTAEEA  60
ARAYDEAARA LRGESTRTNF AGRARHCGGA ARARLSKNLQ HVMARAAAAG RATACAGVGE  120
QFALAAVFRR CQQPAAAAPA PPQTPQQAEA VHAAKHAVQP SFVVPRRNEA PPSSALGAGD  180
LWGGAAAAEV LCAEERSFNV SSSVTVPPSF SASSSESLDV EDFLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1424801471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G290900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660200.11e-157dehydration-responsive element-binding protein 2E
TrEMBLK4A0271e-155K4A027_SETIT; Uncharacterized protein
STRINGSi032213m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16related to AP2 11