PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G309500.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 622aa MW: 68006.6 Da PI: 6.4403

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G309500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	569	619	1	51
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik+ Sevir.2G309500.2.p 569 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKK 619 5899*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	557	621	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-25	572	619	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MVFLAQDVHG GMEPCLSISS RGEVKCYPER VTCMEEGGGD PQPSFSLQAR TPSEGGAAVD 60 LDLLEQLLSG DNGWFDVVSR SPNSLASPPP AAFFSADVTA AAVTTTSSST QAASSWWIQT 120 GGASPSSVRD RFSQALSYIR ETQSDGDVLV QLWVPVSRGD GRLVLTTSGQ PFTLDQSSDS 180 LIRFREVSTK YQFSADVKSG DSPGLPGRVF IGRLPEWSPD VRYFTTYEYP RVRDAQYLDV 240 HGTMGLPVFE KGSYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRSA EVSSVPRVQF 300 STASYKNALP EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYP YCISTIDEAC 360 FVNEPEMQDF HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSAKLDYP LSHHAKIFKL 420 KGAVAIRLRC TRTGTADFVL EFFLPTDCQA LEEQKEVLDS LSGTMRSVCQ TLRVVTDKEM 480 EDEAMWETNE LNSFTPQGKN KAEELSFGGN SADRRGEASW TSLAETSQQE SELAALRMHG 540 MFSSGGQGPS LSGVQSAAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL 600 KRICRQHGIT RWPSRKIKKE V*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MVFLAQDVHG GMEPCLSISS RGEVKCYPER VTCMEEGGGD PQPSFSLQAR TPSEGGAAVD  60
LDLLEQLLSG DNGWFDVVSR SPNSLASPPP AAFFSADVTA AAVTTTSSST QAASSWWIQT  120
GGASPSSVRD RFSQALSYIR ETQSDGDVLV QLWVPVSRGD GRLVLTTSGQ PFTLDQSSDS  180
LIRFREVSTK YQFSADVKSG DSPGLPGRVF IGRLPEWSPD VRYFTTYEYP RVRDAQYLDV  240
HGTMGLPVFE KGSYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRSA EVSSVPRVQF  300
STASYKNALP EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYP YCISTIDEAC  360
FVNEPEMQDF HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSAKLDYP LSHHAKIFKL  420
KGAVAIRLRC TRTGTADFVL EFFLPTDCQA LEEQKEVLDS LSGTMRSVCQ TLRVVTDKEM  480
EDEAMWETNE LNSFTPQGKN KAEELSFGGN SADRRGEASW TSLAETSQQE SELAALRMHG  540
MFSSGGQGPS LSGVQSAAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL  600
KRICRQHGIT RWPSRKIKKE V*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G309500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957562.1	0.0	protein NLP1 isoform X1
Swissprot	Q9SFW8	1e-179	NLP5_ARATH; Protein NLP5
TrEMBL	A0A368Q4I1	0.0	A0A368Q4I1_SETIT; Uncharacterized protein
STRING	Si028915m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	1e-180	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G309500.2.p