PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G316700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 187aa    MW: 19174.2 Da    PI: 6.5066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G316700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000254567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C++ F ++  L  H++ H
  Sevir.2G316700.1.p 45 FACNYCHRKFYSSQALGGHQNAH 67
                        78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.19E-64372No hitNo description
PROSITE profilePS5015711.0324572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MENELAASGA HGVSLDDLSP RGRRSGPAVA AVPAVDSGRR PGESFACNYC HRKFYSSQAL  60
GGHQNAHKLE RTLAKRSRDI LAAAAPPSSS PPPTPAPPAV VFHAAPPERN NNNRDDDFLL  120
PATYGATWST GAAEDATAAQ QAAPPTPSVV MDMAGWGADT AAAADGGCGR LGHGRNGEEI  180
DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G316700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868803e-57BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869173e-57BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871603e-57BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605223e-57EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957624.11e-132zinc finger protein 6
TrEMBLK4A1381e-131K4A138_SETIT; Uncharacterized protein
STRINGSi032580m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-18zinc finger protein 2