PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G360800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 381aa    MW: 40588.5 Da    PI: 6.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G360800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13310355655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Sevir.2G360800.1.p 310 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 355
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-16307366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-13308359No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16309376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGELCED FLPPGPCAAS PDAGADNVFA  60
RFLADHHIRD DKPSPPPPPA PHFPGEAGMA SQQQQMMFQS QHQQQQEMVD AKSGLYRTVS  120
SGMEPASAAA AGVGASNLAR QSSSPAGFLD NLNMDNGYGA MLRAGMSMGF RDGSSAAAAT  180
ADSLAGGGSR LKGQLSFSSR QGSLMSQISE MDSEEVGGSS PEAAGGGRGY IPGYPMGSGW  240
EDSSSLMSEN LSGMKRPRDS LEPGQNGLMH QFSLPKTSSE MANIEKFLQF QDAVPCKIRA  300
KRGCATHPRS IAERVRRTKI SERIRKLQEL VPNMDKQTNT SDMLDLAVDY IKDLQKQVKV  360
LKESHANCTC SASKNQQHSD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G360800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605911e-178EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
GenBankKJ7277491e-178KJ727749.1 Zea mays clone pUT5690 bHLH transcription factor (bHLH90) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
TrEMBLA0A3L6QNR10.0A0A3L6QNR1_PANMI; Uncharacterized protein
STRINGSi030166m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-59bHLH family protein