PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G372300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

YABBY

Protein Properties

Length: 164aa MW: 17576 Da PI: 6.6528

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G372300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.3	6.3e-41	15	160	7	168
YABBY 7 seqvCyvqCnfCntilavsvPsts..lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +e++ yvqC+fC til+vsvP +++v+v+CG C+ +lsv++ + a+ + ll+e + ++++s++ Sevir.2G372300.1.p 15 PERLGYVQCSFCATILLVSVPCGGglQLETVAVQCGNCAGILSVTVPPSPP---ASIE-------LLLQEPALDPP-----PRDSDESSAE 90 899****************98622567999*******99876532...2222.......23333333322.....2223333333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 + + e++ p v++PP ++qr Psayn+fikeei+rika +P+i+h+eafsaa+knWah+P+i Sevir.2G372300.1.p 91 DREAEAAVAENHAF---PAVNKPPVRKQRTPSAYNCFIKEEIRRIKARDPNITHKEAFSAASKNWAHLPRIQQ 160 33322233344444...479************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.8E-43	15	159	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-7	107	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.6E-5	114	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASAAHHPCF GGLLPERLGY VQCSFCATIL LVSVPCGGGL QLETVAVQCG NCAGILSVTV 60 PPSPPASIEL LLQEPALDPP PRDSDESSAE DREAEAAVAE NHAFPAVNKP PVRKQRTPSA 120 YNCFIKEEIR RIKARDPNIT HKEAFSAASK NWAHLPRIQQ KEN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G372300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958092.1	1e-115	protein YABBY 7
Swissprot	A2PZN8	3e-57	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A368Q749	1e-116	A0A368Q749_SETIT; Uncharacterized protein
STRING	Pavir.Ba00601.1.p	5e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-31	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G372300.1.p