PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G380600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 558aa    MW: 59861.6 Da    PI: 6.6548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G380600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32175232260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Sevir.2G380600.2.p 175 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 232
                         8****************************************.***************85 PP
2WRKY107.56.7e-34348406159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dpk v++tYeg+Hnhe
  Sevir.2G380600.2.p 348 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHMGCPVRKHVERASHDPKSVITTYEGKHNHE 406
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-28165233IPR003657WRKY domain
PROSITE profilePS5081123.801169233IPR003657WRKY domain
SuperFamilySSF1182907.98E-25173233IPR003657WRKY domain
SMARTSM007743.6E-35174232IPR003657WRKY domain
PfamPF031061.9E-24175231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-38333408IPR003657WRKY domain
SuperFamilySSF1182904.97E-30340408IPR003657WRKY domain
PROSITE profilePS5081138.297343408IPR003657WRKY domain
SMARTSM007745.4E-40348407IPR003657WRKY domain
PfamPF031061.4E-26349406IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MADSPNPSSG DLPAGSGGSP EKPVLADRRV AALAGAGAGA RYKAMSPARL PISREPCLTI  60
PAGFSPGALL ESPVLLNNFK APAVNDPNHR DTSMQNYTLN HATSSSNLMT ESKSLCSRES  120
THTALVSSDP KPLAIVGPSD NMPAEVGTSE MNQMNSSENA AQETQSENVA EKSAEDGYNW  180
RKYGQKHVKG SENPRSYYKC THPNCEVKKL LERSLDGQIT EVVYKGRHNH PKPQPNRRLA  240
NGAVPSSQGE ERYDGVAPVE DKPSNIYSNL CNQVHSAGML DPVPGPASDD DVDAGGGRPY  300
PGDDTNEDDD LDSKRRKMES AGIDAALMGK PNREPRVVVQ TVSEVDILDD GYRWRKYGQK  360
VVKGNPNPRS YYKCTHMGCP VRKHVERASH DPKSVITTYE GKHNHEVPAS RNASHEMSTA  420
PMKPAVHPIN SNMPGLGGMM RACDARAFTN QYSQAAESDT ISLDLGVGIS PNHSDATNQM  480
QPSVPEPMQY QMQHMAPVYS SMGLPGMAVA TVPGNAASSM YGSREEKGNE GFTFKAAPLD  540
RSANLCYSSA GNLVMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36175409878Probable WRKY transcription factor 4
2lex_A3e-36175409878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G380600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617140.0BT061714.1 Zea mays full-length cDNA clone ZM_BFb0176N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZRL50.0K3ZRL5_SETIT; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-116WRKY family protein