PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G380600.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 523aa    MW: 56695.7 Da    PI: 6.5093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G380600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32140197260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Sevir.2G380600.3.p 140 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 197
                         8****************************************.***************85 PP
2WRKY107.66.1e-34313371159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dpk v++tYeg+Hnhe
  Sevir.2G380600.3.p 313 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHMGCPVRKHVERASHDPKSVITTYEGKHNHE 371
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28130198IPR003657WRKY domain
PROSITE profilePS5081123.801134198IPR003657WRKY domain
SuperFamilySSF1182907.32E-25138198IPR003657WRKY domain
SMARTSM007743.6E-35139197IPR003657WRKY domain
PfamPF031061.7E-24140196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-38298373IPR003657WRKY domain
SuperFamilySSF1182904.58E-30305373IPR003657WRKY domain
PROSITE profilePS5081138.297308373IPR003657WRKY domain
SMARTSM007745.4E-40313372IPR003657WRKY domain
PfamPF031061.2E-26314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MAAILNKSTH LDILPSPRDK SAGSGHEDGG SRDFEFKPHL NSQSVAPAVN DPNHRDTSMQ  60
NYTLNHATSS SNLMTESKSL CSRESTHTAL VSSDPKPLAI VGPSDNMPAE VGTSEMNQMN  120
SSENAAQETQ SENVAEKSAE DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC EVKKLLERSL  180
DGQITEVVYK GRHNHPKPQP NRRLANGAVP SSQGEERYDG VAPVEDKPSN IYSNLCNQVH  240
SAGMLDPVPG PASDDDVDAG GGRPYPGDDT NEDDDLDSKR RKMESAGIDA ALMGKPNREP  300
RVVVQTVSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT HMGCPVRKHV ERASHDPKSV  360
ITTYEGKHNH EVPASRNASH EMSTAPMKPA VHPINSNMPG LGGMMRACDA RAFTNQYSQA  420
AESDTISLDL GVGISPNHSD ATNQMQPSVP EPMQYQMQHM APVYSSMGLP GMAVATVPGN  480
AASSMYGSRE EKGNEGFTFK AAPLDRSANL CYSSAGNLVM GP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36140374878Probable WRKY transcription factor 4
2lex_A2e-36140374878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G380600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548880.0BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZRL50.0K3ZRL5_SETIT; Uncharacterized protein
STRINGSi029245m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-107WRKY family protein