PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G384900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 231aa MW: 23398.8 Da PI: 8.3339

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G384900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.9	3.6e-29	15	116	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++ +++++ Sevir.2G384900.1.p 15 SCNGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWH 105 6*******************9999888899******************************************************* PP DUF260 87 leqlkaelall 97 l+q+++e++l+ Sevir.2G384900.1.p 106 LCQAAVETVLR 116 ***998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.721	14	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-25	15	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRGGPLDTAV VPAMSCNGCR VLRKGCSEAC VLRPCLQWIE GAEAQGHATV FVAKFFGRAG 60 LMSFLTAVPE PQRPAVFQSL LYEAAGRTIN PVSGAVGLLG AGSWHLCQAA VETVLRGGGI 120 RPLPELDGGV PAADGSFAFT ARRAAGCSTF SAAKRATGRV LNVGAPVAVA GGAPEPSCDL 180 GLCLSPGSPP APGERRPRRP GTPSMTSEES VTTTSGGGGG REPELLNLFV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G384900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-162	LOB domain-containing protein 37
Swissprot	Q9FN11	2e-68	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	1e-160	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	1e-161	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-66	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Sevir.2G384900.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]