PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G400300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 244aa    MW: 27000.2 Da    PI: 6.1521
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G400300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-201767155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++ a+++++g
  Sevir.2G400300.2.p 17 TQYRGIRRRP-WGKWAAEIRDPCK---GVRVWLGTYNTAEEAARAYDVAARRIRG 67
                        58********.**********854...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-321777No hitNo description
SuperFamilySSF541714.9E-231876IPR016177DNA-binding domain
PROSITE profilePS5103224.8031875IPR001471AP2/ERF domain
SMARTSM003801.6E-361881IPR001471AP2/ERF domain
PfamPF008471.9E-131867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-321876IPR001471AP2/ERF domain
PRINTSPR003671.6E-111930IPR001471AP2/ERF domain
PRINTSPR003671.6E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKFNGHTAKV ACRKRKTQYR GIRRRPWGKW AAEIRDPCKG VRVWLGTYNT AEEAARAYDV  60
AARRIRGKKA KVNFPDTITA SAKRHPGRVP RPAKKVMSQE SLKFSSASEH AISAGSSTDA  120
TVVKIELSES DSPLPMSSAW LDAFELNQLD GSKYLEAGGK ETTEETDHEN GVTADMVFGN  180
GEVWLADEFA YYEPYPNFMQ LPYLEGNSYE NIDALFNGEV AQDGVNIGGL WSFDDVPMDS  240
GVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-211880568ATERF1
3gcc_A7e-211880568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G400300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698773.11e-177ethylene-responsive transcription factor ERF073
TrEMBLA0A368Q7R01e-177A0A368Q7R0_SETIT; Uncharacterized protein
TrEMBLK3ZV831e-176K3ZV83_SETIT; Uncharacterized protein
STRINGSi030514m1e-177(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-24ERF family protein