PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G438800.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 150aa MW: 16574.6 Da PI: 4.6175

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G438800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.2	1.3e-06	30	65	28	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 28 ieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+L +vkeL++ +L +++++lk+ev++ +s+v Sevir.2G438800.3.p 30 FEQLDARVKELTSSQAELLERIQKLKQEVQNWRSNV 65 58****************************998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MAAESTAPPP PSLPPPATAA APRHPRLLGF EQLDARVKEL TSSQAELLER IQKLKQEVQN 60 WRSNVETQVR TCQNELQGLK KGLDSEVEQL KLEMKEIRSA IQKEKGNLPT QITTLEMSNN 120 DTEQALQTQD QALKVDTDAS MEEQTATQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G438800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964185	1e-107	EU964185.1 Zea mays clone 276545 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958637.1	5e-86	uncharacterized protein LOC101759545 isoform X1
TrEMBL	K3ZXR7	1e-84	K3ZXR7_SETIT; Uncharacterized protein
STRING	Si031399m	2e-85	(Setaria italica)

Link Out ? help Back to Top
Phytozome	Sevir.2G438800.3.p