PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G445900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 958aa    MW: 105320 Da    PI: 7.1526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G445900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-19364463198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Sevir.2G445900.1.p 364 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE- 452
                         99**************************555567778***************9989999999***9.********************887. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++lv+++++
  Sevir.2G445900.1.p 453 PGGKLVMGFRK 463
                         77777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31356473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21361464IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-24362463No hitNo description
PROSITE profilePS5086311.589364465IPR003340B3 DNA binding domain
SMARTSM010191.5E-22364464IPR003340B3 DNA binding domain
PfamPF023624.9E-16364463IPR003340B3 DNA binding domain
PROSITE profilePS5105014.79625675IPR011124Zinc finger, CW-type
PfamPF074966.7E-12630672IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MAMAAAGAAV VAKRCMNPAC GAPATAGGGD WRKGWPLRSG GFALLCDKCG LAYEQFVFCD  60
IFHQKESGWR DCSFCGKRLH CGCVASKNSY DLLDSGGVQC VICMRNSAAQ SASGQVVPKL  120
FPCQNNQRIF GKSDELLLGR KFEQSPSLML DSRNDDIAIV NKSNHPFMVK GIEAGQSSSI  180
LRQKDIENGS RQIKWEQPTL SIGDMGRPFL TRSQSALESP QYTRRDDNKD PTTDSTTSES  240
ISEACLSMSL GIANNGNKME ATSTVERPIL SPTTSIAEGR EITTTLSPFQ HAQRARHFLT  300
RPPRVGEGAV FDPTKDIFPH LRVARPPAEG RGRNQLLPRY WPRITDQELQ QISGDSNSTI  360
VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP LTIQDARGKE WHFQFRFWPN  420
NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG FRKATNTVSL PDSQISAIAN  480
GSLLSETLFS TANENLGVVS GYPGFLQTIK GTADLHPSSL YDHHMNSADG DVSWLKADKF  540
GSRPDEGSLQ FLQKRSRNIG SKSRRFLMDA EDAMELKLTW EEAQEWLRPA PSAKPTIVMI  600
EDYEFEEYDE PPVFAKRSIF TIRATGEQDQ WIQCDDCSKW RRLPLTVIVA SKWTCTDNSW  660
DPKSCSCSAP EELTPKELQS VLQQYEEMRR RKGSYGLKLN VAEMDASSLD ALATAAVFGD  720
VGNQGTASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP ACTCNVCMTV RRRFKTLMMR  780
KKQRQSEREE AEASKKITWA NRDEPEGSNL SRSPQTLDTT RDSSDVTMFD KVADPNKGHI  840
DLNFHPAVRD DHQGQHGAQQ PRPVSMMGLL EVATRPLDNY MKQNGLTSLA GEQAGGSSST  900
ATVLPAPVES EERTSNEGRV ASVERKREPD AMAVDEAGDN QQDKAADDAP LPPPAAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-673424662126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1770781RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G445900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0629270.0BT062927.1 Zea mays full-length cDNA clone ZM_BFc0008I17 mRNA, complete cds.
GenBankJX4285020.0JX428502.1 Zea mays subsp. mays clone pUT3100 ABI32 ABI3VP1 type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGSi028834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]