PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G449400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 347aa MW: 38067.6 Da PI: 7.2683

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G449400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.3	2e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl Sevir.2G449400.1.p 42 KPRLKWTPELHERFVEAVQQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.734	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-32	40	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-18	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-25	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	6.7E-11	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-25	143	189	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MYHQQQLHGH NQHLSSRPGL PPEKQFLLQG GDAGLVLSTD AKPRLKWTPE LHERFVEAVQ 60 QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QAQANATNAK NVLGCRTGTD 120 KPCERNGSPA SHLNTEPQIN RSMHISEALQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL 180 QSVLEKAQEA LAKQNVDLDA GVLGAAAAAE TQQLSELISR ASATKCAQHE HLHHQHLGGV 240 GDGSVDSCLT ACEGSQRDHD MLSIGLSPAP TPRGGGYPFE AARSSGNERG GASTSCCEEF 300 LFLEESGTGR RGSTDEQQEL DLNINDRNTR RPRNCEKIDL NGSSWN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MYHQQQLHGH NQHLSSRPGL PPEKQFLLQG GDAGLVLSTD AKPRLKWTPE LHERFVEAVQ  60
QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QAQANATNAK NVLGCRTGTD  120
KPCERNGSPA SHLNTEPQIN RSMHISEALQ MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL  180
QSVLEKAQEA LAKQNVDLDA GVLGAAAAAE TQQLSELISR ASATKCAQHE HLHHQHLGGV  240
GDGSVDSCLT ACEGSQRDHD MLSIGLSPAP TPRGGGYPFE AARSSGNERG GASTSCCEEF  300
LFLEESGTGR RGSTDEQQEL DLNINDRNTR RPRNCEKIDL NGSSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G449400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069729	5e-73	BT069729.1 Zea mays full-length cDNA clone ZM_BFb0212C10 mRNA, complete cds.
GenBank	KJ726876	5e-73	KJ726876.1 Zea mays clone pUT3417 G2-like transcription factor (GLK59) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958726.1	0.0	myb-related protein 1 isoform X2
Swissprot	Q9FK47	1e-88	PHLA_ARATH; Myb-related protein 1
TrEMBL	K3ZUU0	0.0	K3ZUU0_SETIT; Uncharacterized protein
STRING	Si030350m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	3e-84	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.2G449400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]